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        If you use plots from MultiQC in a publication or presentation, please cite:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

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        About MultiQC

        This report was generated using MultiQC, version 1.5.dev0

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

        You can report bugs, suggest improvements and find the source code for MultiQC on GitHub: https://github.com/ewels/MultiQC

        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2019-01-01, 09:07 based on data in: /mnt/NAS/NASBIO1/DATA/GAMeR_DB/STAPHYLOCOCCUS


        General Statistics

        Showing 1244 samples.

        loading..

        QUAST

        QUAST is a quality assessment tool for genome assemblies, written by the Center for Algorithmic Biotechnology.

        Assembly Statistics

        Showing 311/311 rows and 12/12 columns.
        Sample NameN50 (Kbp)N75 (Kbp)L50 (K)L75 (K)Largest contig (Kbp)Length (Mbp)MisassembliesMismatches/100kbpIndels/100kbpGenesGenes (Partial)Genome Fraction
        05CEB01STA_scaffold_closed
        2155.5Kbp
        2155.5Kbp
        0.0K
        1.0K
        2155.5Kbp
        2.8Mbp
        58.0
        702.57
        30.97
        2326
        45
        92.8%
        05CEB18STA_scaffold_closed
        2726.6Kbp
        2726.6Kbp
        0.0K
        1.0K
        2726.6Kbp
        2.7Mbp
        47.0
        696.63
        32.83
        2547
        47
        92.3%
        05CEB52STA_scaffold_closed
        2791.9Kbp
        2791.9Kbp
        0.0K
        1.0K
        2791.9Kbp
        2.8Mbp
        53.0
        786.24
        35.52
        2290
        41
        91.9%
        07CEB132STA_scaffold_closed
        517.5Kbp
        479.1Kbp
        0.0K
        3.0K
        1288.1Kbp
        2.8Mbp
        35.0
        48.15
        6.06
        2596
        32
        95.2%
        07CEB151STA_scaffold_closed
        2736.1Kbp
        2736.1Kbp
        0.0K
        1.0K
        2736.1Kbp
        2.8Mbp
        36.0
        294.85
        13.47
        2412
        36
        93.1%
        07CEB153STA_scaffold_closed
        2792.1Kbp
        2792.1Kbp
        0.0K
        1.0K
        2792.1Kbp
        2.8Mbp
        49.0
        704.88
        30.51
        2325
        48
        93.2%
        07CEB234STA_scaffold_closed
        2760.5Kbp
        2760.5Kbp
        0.0K
        1.0K
        2760.5Kbp
        2.8Mbp
        54.0
        775.19
        33.90
        2280
        44
        91.2%
        07CEB89STA_scaffold_closed
        2694.3Kbp
        2694.3Kbp
        0.0K
        1.0K
        2694.3Kbp
        2.7Mbp
        61.0
        759.94
        31.40
        2379
        47
        92.3%
        07CEB90STA_scaffold_closed
        2662.3Kbp
        2662.3Kbp
        0.0K
        1.0K
        2662.3Kbp
        2.7Mbp
        76.0
        1756.46
        58.49
        2248
        54
        84.0%
        07CEB91STA_scaffold_closed
        2311.3Kbp
        2311.3Kbp
        0.0K
        1.0K
        2311.3Kbp
        2.8Mbp
        35.0
        58.39
        6.67
        2637
        40
        94.6%
        07CEB93STA_scaffold_closed
        2713.7Kbp
        2713.7Kbp
        0.0K
        1.0K
        2713.7Kbp
        2.7Mbp
        61.0
        771.71
        32.62
        2360
        50
        92.0%
        07CEB94STA_scaffold_closed
        2776.6Kbp
        2776.6Kbp
        0.0K
        1.0K
        2776.6Kbp
        2.8Mbp
        39.0
        37.83
        3.03
        2497
        31
        95.0%
        08CEB04STA_scaffold_closed
        2756.6Kbp
        2756.6Kbp
        0.0K
        1.0K
        2756.6Kbp
        2.8Mbp
        35.0
        43.52
        4.40
        2570
        30
        94.0%
        08CEB10STA_scaffold_closed
        2793.9Kbp
        2793.9Kbp
        0.0K
        1.0K
        2793.9Kbp
        2.8Mbp
        112.0
        635.25
        25.61
        2420
        117
        91.8%
        08CEB11STA_scaffold_closed
        2739.6Kbp
        2739.6Kbp
        0.0K
        1.0K
        2739.6Kbp
        2.8Mbp
        33.0
        47.75
        6.20
        2599
        29
        95.3%
        08CEB333STA_scaffold_closed
        2269.8Kbp
        2269.8Kbp
        0.0K
        1.0K
        2269.8Kbp
        2.8Mbp
        33.0
        47.99
        6.87
        2600
        25
        95.3%
        09CEB04STA_scaffold_closed
        1794.3Kbp
        1002.7Kbp
        0.0K
        2.0K
        1794.3Kbp
        2.8Mbp
        28.0
        9.30
        2.76
        2814
        30
        98.8%
        09CEB204STA_scaffold_closed
        2195.7Kbp
        2195.7Kbp
        0.0K
        1.0K
        2195.7Kbp
        2.7Mbp
        32.0
        54.77
        4.77
        2368
        31
        93.8%
        09CEB303STA_scaffold_closed
        2741.7Kbp
        2741.7Kbp
        0.0K
        1.0K
        2741.7Kbp
        2.8Mbp
        32.0
        46.81
        6.78
        2630
        36
        94.6%
        09CEB314STA_scaffold_closed
        2193.7Kbp
        2193.7Kbp
        0.0K
        1.0K
        2193.7Kbp
        2.8Mbp
        24.0
        30.23
        3.62
        2390
        22
        95.4%
        09CEB319STA_scaffold_closed
        2287.7Kbp
        2287.7Kbp
        0.0K
        1.0K
        2287.7Kbp
        2.8Mbp
        26.0
        32.20
        3.89
        2391
        24
        95.4%
        09CEB329STA_scaffold_closed
        2301.0Kbp
        2301.0Kbp
        0.0K
        1.0K
        2301.0Kbp
        2.8Mbp
        25.0
        31.94
        4.08
        2388
        21
        95.4%
        10CEB282STA_scaffold_closed
        2704.6Kbp
        2704.6Kbp
        0.0K
        1.0K
        2704.6Kbp
        2.7Mbp
        30.0
        25.32
        3.18
        2460
        22
        93.9%
        10CEB283STA_scaffold_closed
        2789.8Kbp
        2789.8Kbp
        0.0K
        1.0K
        2789.8Kbp
        2.8Mbp
        49.0
        662.05
        28.92
        2557
        50
        93.3%
        10CEB289STA_scaffold_closed
        2770.2Kbp
        2770.2Kbp
        0.0K
        1.0K
        2770.2Kbp
        2.8Mbp
        70.0
        739.72
        30.00
        2552
        54
        93.2%
        10CEB304STA_scaffold_closed
        2755.5Kbp
        2755.5Kbp
        0.0K
        1.0K
        2755.5Kbp
        2.8Mbp
        37.0
        46.98
        6.96
        2656
        29
        95.2%
        10CEB324STA_scaffold_closed
        2740.7Kbp
        2740.7Kbp
        0.0K
        1.0K
        2740.7Kbp
        2.7Mbp
        52.0
        669.67
        31.00
        2548
        47
        92.2%
        10CEB329STA_scaffold_closed
        2700.4Kbp
        2700.4Kbp
        0.0K
        1.0K
        2700.4Kbp
        2.7Mbp
        59.0
        778.26
        33.37
        2395
        42
        93.0%
        10CEB376STA_scaffold_closed
        2693.1Kbp
        2693.1Kbp
        0.0K
        1.0K
        2693.1Kbp
        2.7Mbp
        48.0
        704.18
        32.73
        2492
        51
        90.8%
        10CEB381STA_scaffold_closed
        2201.7Kbp
        2201.7Kbp
        0.0K
        1.0K
        2201.7Kbp
        2.9Mbp
        46.0
        58.34
        5.82
        2650
        36
        96.7%
        10CEB396STA_scaffold_closed
        1006.4Kbp
        1006.4Kbp
        0.0K
        2.0K
        1503.7Kbp
        3.0Mbp
        45.0
        107.12
        7.07
        2735
        51
        97.7%
        10CEB401STA_scaffold_closed
        2797.4Kbp
        2797.4Kbp
        0.0K
        1.0K
        2797.4Kbp
        2.8Mbp
        32.0
        66.64
        6.38
        2683
        39
        96.1%
        10CEB402STA_scaffold_closed
        2797.0Kbp
        2797.0Kbp
        0.0K
        1.0K
        2797.0Kbp
        2.8Mbp
        28.0
        70.16
        7.09
        2683
        41
        96.0%
        10CEB413STA_scaffold_closed
        2768.3Kbp
        2768.3Kbp
        0.0K
        1.0K
        2768.3Kbp
        2.8Mbp
        36.0
        64.69
        8.03
        2652
        38
        94.9%
        10CEB418STA_scaffold_closed
        2801.0Kbp
        2801.0Kbp
        0.0K
        1.0K
        2801.0Kbp
        2.8Mbp
        42.0
        40.03
        4.43
        2460
        25
        93.9%
        10CEB427STA_scaffold_closed
        2606.1Kbp
        2606.1Kbp
        0.0K
        1.0K
        2606.1Kbp
        2.8Mbp
        30.0
        48.49
        7.19
        2651
        33
        95.2%
        11CEB145STA_scaffold_closed
        2499.6Kbp
        2499.6Kbp
        0.0K
        1.0K
        2499.6Kbp
        2.9Mbp
        32.0
        42.56
        4.05
        2561
        40
        97.3%
        11CEB272STA_scaffold_closed
        2080.4Kbp
        699.8Kbp
        0.0K
        2.0K
        2080.4Kbp
        2.8Mbp
        40.0
        45.89
        5.80
        2589
        30
        94.6%
        11CEB273STA_scaffold_closed
        2311.8Kbp
        2311.8Kbp
        0.0K
        1.0K
        2311.8Kbp
        2.8Mbp
        42.0
        47.25
        6.32
        2598
        27
        95.2%
        11CEB274STA_scaffold_closed
        2615.8Kbp
        2615.8Kbp
        0.0K
        1.0K
        2615.8Kbp
        2.6Mbp
        43.0
        295.35
        13.79
        2361
        40
        91.2%
        11CEB275STA_scaffold_closed
        2681.7Kbp
        2681.7Kbp
        0.0K
        1.0K
        2681.7Kbp
        2.7Mbp
        40.0
        297.17
        14.33
        2402
        37
        93.0%
        11CEB276STA_scaffold_closed
        2818.6Kbp
        2818.6Kbp
        0.0K
        1.0K
        2818.6Kbp
        2.8Mbp
        39.0
        50.83
        6.73
        2594
        32
        95.2%
        11CEB277STA_scaffold_closed
        2742.8Kbp
        2742.8Kbp
        0.0K
        1.0K
        2742.8Kbp
        2.8Mbp
        65.0
        649.19
        24.93
        2491
        54
        92.1%
        11CEB278STA_scaffold_closed
        2312.6Kbp
        2312.6Kbp
        0.0K
        1.0K
        2312.6Kbp
        2.8Mbp
        38.0
        55.03
        6.72
        2598
        29
        95.3%
        11CEB279STA_scaffold_closed
        2694.0Kbp
        2694.0Kbp
        0.0K
        1.0K
        2694.0Kbp
        2.7Mbp
        61.0
        662.63
        25.25
        2498
        49
        92.1%
        11CEB280STA_scaffold_closed
        2686.3Kbp
        2686.3Kbp
        0.0K
        1.0K
        2686.3Kbp
        2.7Mbp
        41.0
        296.00
        12.85
        2410
        37
        92.8%
        11CEB281STA_scaffold_closed
        2270.1Kbp
        2270.1Kbp
        0.0K
        1.0K
        2270.1Kbp
        2.8Mbp
        38.0
        45.96
        5.60
        2596
        28
        95.3%
        11CEB282STA_scaffold_closed
        2789.2Kbp
        2789.2Kbp
        0.0K
        1.0K
        2789.2Kbp
        2.8Mbp
        35.0
        45.85
        5.23
        2589
        30
        94.6%
        11CEB283STA_scaffold_closed
        2664.2Kbp
        2664.2Kbp
        0.0K
        1.0K
        2664.2Kbp
        2.7Mbp
        33.0
        288.75
        12.71
        2408
        34
        92.9%
        11CEB284STA_scaffold_closed
        1438.5Kbp
        831.2Kbp
        0.0K
        2.0K
        1438.5Kbp
        2.8Mbp
        40.0
        46.94
        5.98
        2597
        30
        95.2%
        11CEB285STA_scaffold_closed
        2689.1Kbp
        2689.1Kbp
        0.0K
        1.0K
        2689.1Kbp
        2.7Mbp
        43.0
        297.87
        13.23
        2402
        39
        92.9%
        12CEB107STA_scaffold_closed
        2656.4Kbp
        2656.4Kbp
        0.0K
        1.0K
        2656.4Kbp
        2.8Mbp
        49.0
        733.22
        29.36
        2412
        52
        91.4%
        12CEB112STA_scaffold_closed
        1920.0Kbp
        599.9Kbp
        0.0K
        2.0K
        1920.0Kbp
        2.7Mbp
        52.0
        694.23
        29.77
        2414
        47
        91.4%
        12CEB117STA_scaffold_closed
        2718.4Kbp
        2718.4Kbp
        0.0K
        1.0K
        2718.4Kbp
        3.4Mbp
        77.0
        1727.20
        57.61
        2311
        56
        85.2%
        12CEB137STA_scaffold_closed
        2127.9Kbp
        2127.9Kbp
        0.0K
        1.0K
        2127.9Kbp
        2.7Mbp
        24.0
        46.03
        5.46
        2380
        27
        94.6%
        12CEB265STA_scaffold_closed
        2743.1Kbp
        2743.1Kbp
        0.0K
        1.0K
        2743.1Kbp
        2.7Mbp
        51.0
        685.80
        30.18
        2527
        46
        91.5%
        12CEB294STA_scaffold_closed
        2607.7Kbp
        2607.7Kbp
        0.0K
        1.0K
        2607.7Kbp
        2.6Mbp
        28.0
        47.52
        7.09
        2504
        25
        90.0%
        12CEB299STA_scaffold_closed
        2461.2Kbp
        2461.2Kbp
        0.0K
        1.0K
        2461.2Kbp
        2.7Mbp
        58.0
        51.82
        6.89
        2539
        57
        94.0%
        12CEB304STA_scaffold_closed
        2126.9Kbp
        2126.9Kbp
        0.0K
        1.0K
        2126.9Kbp
        2.8Mbp
        55.0
        782.61
        32.91
        2292
        41
        91.7%
        12CEB368STA_scaffold_closed
        2694.3Kbp
        2694.3Kbp
        0.0K
        1.0K
        2694.3Kbp
        2.7Mbp
        85.0
        36.67
        14.93
        2484
        63
        95.4%
        12CEB428STA_scaffold_closed
        2766.1Kbp
        2766.1Kbp
        0.0K
        1.0K
        2766.1Kbp
        2.8Mbp
        74.0
        1733.62
        56.29
        2296
        58
        85.0%
        12CEB433STA_scaffold_closed
        2359.7Kbp
        2359.7Kbp
        0.0K
        1.0K
        2359.7Kbp
        2.8Mbp
        38.0
        21.95
        3.06
        2499
        39
        95.3%
        12CEB445STA_scaffold_closed
        2793.5Kbp
        2793.5Kbp
        0.0K
        1.0K
        2793.5Kbp
        2.8Mbp
        40.0
        26.56
        4.35
        2598
        25
        94.2%
        12CEB446STA_scaffold_closed
        1960.3Kbp
        716.5Kbp
        0.0K
        2.0K
        1960.3Kbp
        2.7Mbp
        66.0
        1773.87
        58.10
        2241
        53
        83.8%
        12CEB447STA_scaffold_closed
        2761.9Kbp
        2761.9Kbp
        0.0K
        1.0K
        2761.9Kbp
        2.8Mbp
        55.0
        724.69
        29.53
        2409
        44
        91.3%
        12CEB456STA_scaffold_closed
        2753.6Kbp
        2753.6Kbp
        0.0K
        1.0K
        2753.6Kbp
        2.8Mbp
        52.0
        708.38
        28.99
        2386
        47
        90.4%
        12CEB461STA_scaffold_closed
        2065.9Kbp
        688.6Kbp
        0.0K
        2.0K
        2065.9Kbp
        2.8Mbp
        55.0
        707.89
        28.14
        2384
        46
        90.5%
        12CEB476STA_scaffold_closed
        2743.6Kbp
        2743.6Kbp
        0.0K
        1.0K
        2743.6Kbp
        2.7Mbp
        55.0
        725.61
        32.92
        2538
        58
        92.5%
        12CEB496STA_scaffold_closed
        2339.4Kbp
        2339.4Kbp
        0.0K
        1.0K
        2339.4Kbp
        2.8Mbp
        58.0
        718.82
        33.86
        2556
        65
        92.9%
        12CEB507STA_scaffold_closed
        2131.0Kbp
        2131.0Kbp
        0.0K
        1.0K
        2131.0Kbp
        2.7Mbp
        58.0
        671.62
        26.44
        2500
        47
        92.0%
        12CEB512STA_scaffold_closed
        2254.3Kbp
        2254.3Kbp
        0.0K
        1.0K
        2254.3Kbp
        2.7Mbp
        140.0
        676.38
        34.22
        2424
        107
        91.3%
        13-319KF_scaffold_closed
        2771.1Kbp
        2771.1Kbp
        0.0K
        1.0K
        2771.1Kbp
        2.8Mbp
        34.0
        30.31
        3.57
        2483
        29
        94.6%
        13CEB175STA_scaffold_closed
        1598.8Kbp
        1196.4Kbp
        0.0K
        2.0K
        1598.8Kbp
        2.8Mbp
        41.0
        78.55
        5.66
        2696
        38
        96.5%
        13CEB176STA_scaffold_closed
        2345.9Kbp
        2345.9Kbp
        0.0K
        1.0K
        2345.9Kbp
        2.9Mbp
        36.0
        13.94
        2.03
        2654
        28
        96.2%
        13CEB177STA_scaffold_closed
        2764.3Kbp
        2764.3Kbp
        0.0K
        1.0K
        2764.3Kbp
        2.8Mbp
        61.0
        1348.48
        52.20
        2248
        41
        89.6%
        13CEB178STA_scaffold_closed
        2726.5Kbp
        2726.5Kbp
        0.0K
        1.0K
        2726.5Kbp
        2.8Mbp
        32.0
        39.01
        3.11
        2485
        31
        94.8%
        13CEB179STA_scaffold_closed
        2797.1Kbp
        2797.1Kbp
        0.0K
        1.0K
        2797.1Kbp
        2.8Mbp
        29.0
        9.72
        3.10
        2648
        31
        98.1%
        13CEB181STA_scaffold_closed
        2855.5Kbp
        2855.5Kbp
        0.0K
        1.0K
        2855.5Kbp
        2.9Mbp
        48.0
        141.05
        8.77
        2619
        31
        94.3%
        13CEB182STA_scaffold_closed
        2130.4Kbp
        2130.4Kbp
        0.0K
        1.0K
        2130.4Kbp
        2.7Mbp
        26.0
        33.97
        4.22
        2589
        28
        97.7%
        13CEB184STA_scaffold_closed
        2680.2Kbp
        2680.2Kbp
        0.0K
        1.0K
        2680.2Kbp
        2.7Mbp
        47.0
        702.12
        30.42
        2464
        46
        91.6%
        13CEB188STA_scaffold_closed
        1844.8Kbp
        909.1Kbp
        0.0K
        2.0K
        1844.8Kbp
        2.8Mbp
        38.0
        24.57
        3.17
        2514
        29
        95.3%
        13CEB190STA_scaffold_closed
        2707.6Kbp
        2707.6Kbp
        0.0K
        1.0K
        2707.6Kbp
        2.7Mbp
        29.0
        13.75
        3.29
        2634
        15
        98.6%
        13CEB191STA_scaffold_closed
        2804.0Kbp
        2804.0Kbp
        0.0K
        1.0K
        2804.0Kbp
        2.8Mbp
        29.0
        60.69
        4.54
        2579
        32
        95.9%
        13CEB193STA_scaffold_closed
        2746.6Kbp
        2746.6Kbp
        0.0K
        1.0K
        2746.6Kbp
        2.8Mbp
        49.0
        685.51
        29.97
        2317
        47
        92.8%
        13CEB235STA_scaffold_closed
        2213.8Kbp
        2213.8Kbp
        0.0K
        1.0K
        2213.8Kbp
        2.7Mbp
        58.0
        766.17
        30.95
        2393
        50
        92.8%
        13CEB239STA_scaffold_closed
        2695.2Kbp
        2695.2Kbp
        0.0K
        1.0K
        2695.2Kbp
        2.7Mbp
        46.0
        711.06
        27.48
        2390
        42
        90.9%
        13CEB243STA_scaffold_closed
        2694.9Kbp
        2694.9Kbp
        0.0K
        1.0K
        2694.9Kbp
        2.7Mbp
        59.0
        773.34
        30.83
        2393
        48
        92.8%
        13CEB251STA_scaffold_closed
        2814.7Kbp
        2814.7Kbp
        0.0K
        1.0K
        2814.7Kbp
        2.8Mbp
        59.0
        793.70
        34.89
        2302
        46
        91.9%
        13CEB257STA_scaffold_closed
        2144.1Kbp
        2144.1Kbp
        0.0K
        1.0K
        2144.1Kbp
        2.8Mbp
        58.0
        796.51
        34.44
        2299
        50
        91.9%
        13CEB307STA_scaffold_closed
        2799.4Kbp
        2799.4Kbp
        0.0K
        1.0K
        2799.4Kbp
        2.8Mbp
        30.0
        53.73
        6.94
        2666
        38
        95.5%
        13CEB308STA_scaffold_closed
        2763.5Kbp
        2763.5Kbp
        0.0K
        1.0K
        2763.5Kbp
        2.8Mbp
        46.0
        752.60
        28.74
        2437
        45
        92.2%
        13CEB309STA_scaffold_closed
        2761.9Kbp
        2761.9Kbp
        0.0K
        1.0K
        2761.9Kbp
        2.8Mbp
        51.0
        749.93
        27.98
        2436
        47
        92.2%
        13CEB310STA_scaffold_closed
        2788.6Kbp
        2788.6Kbp
        0.0K
        1.0K
        2788.6Kbp
        2.8Mbp
        36.0
        58.55
        7.69
        2666
        42
        95.5%
        13CEB311STA_scaffold_closed
        1885.7Kbp
        893.1Kbp
        0.0K
        2.0K
        1885.7Kbp
        2.8Mbp
        65.0
        708.06
        29.51
        2568
        55
        93.7%
        13CEB312STA_scaffold_closed
        2781.5Kbp
        2781.5Kbp
        0.0K
        1.0K
        2781.5Kbp
        2.8Mbp
        82.0
        1807.85
        69.01
        2358
        64
        84.1%
        13CEB313STA_scaffold_closed
        2779.7Kbp
        2779.7Kbp
        0.0K
        1.0K
        2779.7Kbp
        2.8Mbp
        82.0
        1805.29
        69.33
        2356
        64
        84.0%
        13CEB314STA_scaffold_closed
        2797.6Kbp
        2797.6Kbp
        0.0K
        1.0K
        2797.6Kbp
        2.8Mbp
        45.0
        26.30
        4.12
        2607
        33
        94.6%
        13CEB315STA_scaffold_closed
        2836.9Kbp
        2836.9Kbp
        0.0K
        1.0K
        2836.9Kbp
        2.9Mbp
        43.0
        26.49
        3.93
        2606
        33
        94.7%
        13CEB316STA_scaffold_closed
        2358.6Kbp
        2358.6Kbp
        0.0K
        1.0K
        2358.6Kbp
        2.8Mbp
        43.0
        24.42
        3.90
        2606
        32
        94.5%
        13CEB317STA_scaffold_closed
        2782.8Kbp
        2782.8Kbp
        0.0K
        1.0K
        2782.8Kbp
        2.8Mbp
        79.0
        1807.21
        69.25
        2354
        66
        84.0%
        13CEB318STA_scaffold_closed
        2777.3Kbp
        2777.3Kbp
        0.0K
        1.0K
        2777.3Kbp
        2.8Mbp
        82.0
        1781.30
        68.52
        2355
        67
        84.0%
        13CEB319STA_scaffold_closed
        2769.7Kbp
        2769.7Kbp
        0.0K
        1.0K
        2769.7Kbp
        2.8Mbp
        34.0
        29.45
        3.83
        2479
        33
        94.6%
        13CEB320STA_scaffold_closed
        2769.7Kbp
        2769.7Kbp
        0.0K
        1.0K
        2769.7Kbp
        2.8Mbp
        38.0
        29.15
        3.42
        2478
        33
        94.6%
        13CEB322STA_scaffold_closed
        1868.0Kbp
        901.9Kbp
        0.0K
        2.0K
        1868.0Kbp
        2.8Mbp
        41.0
        705.76
        33.25
        2601
        45
        93.7%
        13CEB323STA_scaffold_closed
        2675.2Kbp
        2675.2Kbp
        0.0K
        1.0K
        2675.2Kbp
        2.7Mbp
        42.0
        32.61
        4.72
        2671
        26
        96.4%
        13CEB324STA_scaffold_closed
        2724.5Kbp
        2724.5Kbp
        0.0K
        1.0K
        2724.5Kbp
        2.7Mbp
        55.0
        696.15
        31.21
        2533
        48
        92.0%
        13CEB326STA_scaffold_closed
        2266.4Kbp
        2266.4Kbp
        0.0K
        1.0K
        2266.4Kbp
        2.7Mbp
        14.0
        13.71
        2.93
        2628
        34
        98.0%
        13CEB327STA_scaffold_closed
        2817.9Kbp
        2817.9Kbp
        0.0K
        1.0K
        2817.9Kbp
        2.8Mbp
        51.0
        134.56
        8.12
        2549
        36
        92.9%
        13CEB328STA_scaffold_closed
        2799.5Kbp
        2799.5Kbp
        0.0K
        1.0K
        2799.5Kbp
        2.8Mbp
        42.0
        120.08
        7.59
        2518
        34
        92.1%
        13CEB329STA_scaffold_closed
        2743.4Kbp
        2743.4Kbp
        0.0K
        1.0K
        2743.4Kbp
        2.7Mbp
        35.0
        36.37
        3.71
        2495
        30
        94.8%
        13CEB332STA_scaffold_closed
        2749.6Kbp
        2749.6Kbp
        0.0K
        1.0K
        2749.6Kbp
        2.8Mbp
        50.0
        680.31
        29.21
        2318
        40
        92.6%
        13CEB412STA_scaffold_closed
        2725.6Kbp
        2725.6Kbp
        0.0K
        1.0K
        2725.6Kbp
        2.8Mbp
        47.0
        695.96
        32.46
        2544
        48
        92.3%
        13CEB417STA_scaffold_closed
        2055.0Kbp
        672.5Kbp
        0.0K
        2.0K
        2055.0Kbp
        2.8Mbp
        47.0
        685.37
        32.33
        2539
        47
        92.2%
        13CEB422STA_scaffold_closed
        2727.3Kbp
        2727.3Kbp
        0.0K
        1.0K
        2727.3Kbp
        2.8Mbp
        45.0
        675.76
        32.84
        2539
        48
        92.3%
        13CEB427STA_scaffold_closed
        2727.1Kbp
        2727.1Kbp
        0.0K
        1.0K
        2727.1Kbp
        2.8Mbp
        47.0
        692.11
        33.10
        2546
        48
        92.3%
        13CEB52STA_scaffold_closed
        2757.0Kbp
        2757.0Kbp
        0.0K
        1.0K
        2757.0Kbp
        2.8Mbp
        26.0
        6.73
        2.04
        2751
        29
        97.4%
        14072_S5_scaffold_closed
        2790.9Kbp
        2790.9Kbp
        0.0K
        1.0K
        2790.9Kbp
        2.8Mbp
        34.0
        46.31
        5.12
        2613
        25
        94.5%
        14079_S6_scaffold_closed
        2741.7Kbp
        2741.7Kbp
        0.0K
        1.0K
        2741.7Kbp
        2.8Mbp
        32.0
        47.74
        5.22
        2616
        25
        95.5%
        14107_S7_scaffold_closed
        2722.7Kbp
        2722.7Kbp
        0.0K
        1.0K
        2722.7Kbp
        2.7Mbp
        35.0
        299.31
        12.74
        2423
        39
        93.3%
        14128_S8_scaffold_closed
        2739.7Kbp
        2739.7Kbp
        0.0K
        1.0K
        2739.7Kbp
        2.9Mbp
        35.0
        49.54
        5.60
        2612
        25
        95.3%
        14910_S9_scaffold_closed
        2760.7Kbp
        2760.7Kbp
        0.0K
        1.0K
        2760.7Kbp
        3.0Mbp
        50.0
        64.00
        5.77
        2505
        36
        96.1%
        14A_scaffold_closed
        2723.1Kbp
        2723.1Kbp
        0.0K
        1.0K
        2723.1Kbp
        2.7Mbp
        63.0
        2047.76
        65.16
        2313
        54
        82.4%
        14SBCL1004STA_scaffold_closed
        1692.7Kbp
        1026.0Kbp
        0.0K
        2.0K
        1692.7Kbp
        2.8Mbp
        106.0
        58.21
        17.30
        2495
        116
        94.2%
        14SBCL1337STA_scaffold_closed
        1433.9Kbp
        1187.7Kbp
        0.0K
        2.0K
        1433.9Kbp
        2.8Mbp
        52.0
        791.95
        34.59
        2272
        45
        91.0%
        14SBCL1338STA_scaffold_closed
        2092.6Kbp
        2092.6Kbp
        0.0K
        1.0K
        2092.6Kbp
        2.8Mbp
        52.0
        778.12
        34.31
        2268
        42
        90.9%
        14SBCL1339STA_scaffold_closed
        1930.9Kbp
        827.1Kbp
        0.0K
        2.0K
        1930.9Kbp
        2.8Mbp
        54.0
        779.75
        34.35
        2273
        44
        90.9%
        14SBCL1340STA_scaffold_closed
        2190.1Kbp
        2190.1Kbp
        0.0K
        1.0K
        2190.1Kbp
        2.8Mbp
        52.0
        781.60
        34.36
        2271
        44
        91.0%
        14SBCL1343STA_scaffold_closed
        1763.4Kbp
        942.7Kbp
        0.0K
        2.0K
        1763.4Kbp
        2.7Mbp
        30.0
        45.31
        5.07
        2515
        28
        95.3%
        14SBCL1344STA_scaffold_closed
        2352.5Kbp
        2352.5Kbp
        0.0K
        1.0K
        2352.5Kbp
        2.7Mbp
        28.0
        45.09
        3.80
        2512
        30
        95.3%
        14SBCL1346STA_scaffold_closed
        2706.3Kbp
        2706.3Kbp
        0.0K
        1.0K
        2706.3Kbp
        2.7Mbp
        32.0
        45.21
        4.21
        2514
        29
        95.2%
        14SBCL1347STA_scaffold_closed
        2706.4Kbp
        2706.4Kbp
        0.0K
        1.0K
        2706.4Kbp
        2.7Mbp
        27.0
        47.15
        5.67
        2514
        30
        95.2%
        14SBCL1348STA_scaffold_closed
        2706.4Kbp
        2706.4Kbp
        0.0K
        1.0K
        2706.4Kbp
        2.7Mbp
        29.0
        43.78
        4.55
        2514
        31
        95.3%
        14SBCL1349STA_scaffold_closed
        2707.2Kbp
        2707.2Kbp
        0.0K
        1.0K
        2707.2Kbp
        2.7Mbp
        33.0
        45.17
        5.15
        2509
        30
        95.2%
        14SBCL1350STA_scaffold_closed
        2706.5Kbp
        2706.5Kbp
        0.0K
        1.0K
        2706.5Kbp
        2.7Mbp
        30.0
        45.44
        4.59
        2513
        28
        95.2%
        14SBCL1351STA_scaffold_closed
        2707.8Kbp
        2707.8Kbp
        0.0K
        1.0K
        2707.8Kbp
        2.7Mbp
        35.0
        46.18
        4.10
        2509
        29
        95.2%
        14SBCL1353STA_scaffold_closed
        2596.5Kbp
        2596.5Kbp
        0.0K
        1.0K
        2596.5Kbp
        2.6Mbp
        21.0
        48.28
        3.92
        2295
        25
        88.3%
        14SBCL1357STA_scaffold_closed
        1648.3Kbp
        1159.0Kbp
        0.0K
        2.0K
        1648.3Kbp
        2.8Mbp
        31.0
        52.39
        5.56
        2493
        30
        95.9%
        14SBCL765STA_scaffold_closed
        1773.4Kbp
        534.8Kbp
        0.0K
        2.0K
        1773.4Kbp
        2.8Mbp
        68.0
        727.58
        31.75
        2504
        65
        90.6%
        14SBCL766STA_scaffold_closed
        2753.1Kbp
        2753.1Kbp
        0.0K
        1.0K
        2753.1Kbp
        2.8Mbp
        57.0
        720.33
        32.28
        2497
        60
        90.5%
        14SBCL767STA_scaffold_closed
        2713.1Kbp
        2713.1Kbp
        0.0K
        1.0K
        2713.1Kbp
        2.7Mbp
        156.0
        700.42
        40.19
        2403
        130
        89.6%
        14SBCL770STA_scaffold_closed
        2808.7Kbp
        2808.7Kbp
        0.0K
        1.0K
        2808.7Kbp
        2.8Mbp
        35.0
        28.32
        3.87
        2672
        24
        96.1%
        14SBCL775STA_scaffold_closed
        2716.1Kbp
        2716.1Kbp
        0.0K
        1.0K
        2716.1Kbp
        2.7Mbp
        36.0
        53.11
        4.27
        2486
        27
        94.8%
        14SBCL83STA_scaffold_closed
        2707.4Kbp
        2707.4Kbp
        0.0K
        1.0K
        2707.4Kbp
        2.7Mbp
        30.0
        46.55
        4.49
        2506
        28
        96.2%
        14SBCL84STA_scaffold_closed
        1646.2Kbp
        1092.6Kbp
        0.0K
        2.0K
        1646.2Kbp
        2.7Mbp
        57.0
        652.48
        24.33
        2494
        49
        91.8%
        14SBCL881STA_scaffold_closed
        2059.8Kbp
        2059.8Kbp
        0.0K
        1.0K
        2059.8Kbp
        2.7Mbp
        57.0
        692.84
        32.32
        2460
        49
        91.3%
        14SBCL882STA_scaffold_closed
        2745.6Kbp
        2745.6Kbp
        0.0K
        1.0K
        2745.6Kbp
        2.7Mbp
        52.0
        688.73
        32.30
        2543
        48
        92.1%
        14SBCL891STA_scaffold_closed
        2175.1Kbp
        2175.1Kbp
        0.0K
        1.0K
        2175.1Kbp
        2.7Mbp
        25.0
        21.87
        2.98
        2522
        23
        95.4%
        14SBCL896STA_scaffold_closed
        2687.8Kbp
        2687.8Kbp
        0.0K
        1.0K
        2687.8Kbp
        2.7Mbp
        27.0
        21.69
        3.76
        2517
        26
        95.3%
        14SBCL901STA_scaffold_closed
        2687.4Kbp
        2687.4Kbp
        0.0K
        1.0K
        2687.4Kbp
        2.7Mbp
        24.0
        22.13
        3.32
        2519
        24
        95.3%
        14SBCL997STA_scaffold_closed
        2740.9Kbp
        2740.9Kbp
        0.0K
        1.0K
        2740.9Kbp
        2.8Mbp
        60.0
        749.25
        31.98
        2388
        53
        92.6%
        15-1509KF_scaffold_closed
        2734.7Kbp
        2734.7Kbp
        0.0K
        1.0K
        2734.7Kbp
        2.7Mbp
        70.0
        710.23
        29.58
        2566
        52
        93.7%
        15SBCL1201STA_scaffold_closed
        2790.0Kbp
        2790.0Kbp
        0.0K
        1.0K
        2790.0Kbp
        2.8Mbp
        29.0
        46.78
        6.67
        2639
        32
        94.6%
        15SBCL1206STA_scaffold_closed
        2771.4Kbp
        2771.4Kbp
        0.0K
        1.0K
        2771.4Kbp
        2.8Mbp
        28.0
        46.32
        7.31
        2636
        32
        94.6%
        15SBCL1211STA_scaffold_closed
        2222.3Kbp
        2222.3Kbp
        0.0K
        1.0K
        2222.3Kbp
        2.7Mbp
        51.0
        698.27
        29.64
        2479
        53
        89.7%
        15SBCL1218STA_scaffold_closed
        2727.8Kbp
        2727.8Kbp
        0.0K
        1.0K
        2727.8Kbp
        2.7Mbp
        58.0
        714.64
        32.50
        2495
        52
        90.5%
        15SBCL1220STA_scaffold_closed
        2666.5Kbp
        2666.5Kbp
        0.0K
        1.0K
        2666.5Kbp
        2.7Mbp
        53.0
        700.44
        29.40
        2481
        55
        89.8%
        15SBCL1228STA_scaffold_closed
        3069.4Kbp
        3069.4Kbp
        0.0K
        1.0K
        3069.4Kbp
        3.1Mbp
        28.0
        47.18
        6.55
        2640
        30
        94.7%
        15SBCL1251STA_scaffold_closed
        1669.5Kbp
        912.6Kbp
        0.0K
        2.0K
        1669.5Kbp
        2.8Mbp
        30.0
        46.72
        6.14
        2635
        31
        94.6%
        15SBCL1261STA_scaffold_closed
        2018.1Kbp
        661.6Kbp
        0.0K
        2.0K
        2018.1Kbp
        2.7Mbp
        47.0
        715.69
        31.85
        2483
        35
        90.0%
        15SBCL1262STA_scaffold_closed
        2772.5Kbp
        2772.5Kbp
        0.0K
        1.0K
        2772.5Kbp
        2.8Mbp
        25.0
        45.38
        6.29
        2642
        29
        94.7%
        15SBCL1267STA_scaffold_closed
        2769.5Kbp
        2769.5Kbp
        0.0K
        1.0K
        2769.5Kbp
        2.8Mbp
        35.0
        45.28
        7.12
        2638
        32
        94.6%
        15SBCL1292STA_scaffold_closed
        1451.2Kbp
        1268.0Kbp
        0.0K
        2.0K
        1451.2Kbp
        2.7Mbp
        50.0
        753.26
        29.84
        2518
        47
        91.3%
        15SBCL1299STA_scaffold_closed
        2706.3Kbp
        2706.3Kbp
        0.0K
        1.0K
        2706.3Kbp
        2.8Mbp
        57.0
        679.60
        26.07
        2499
        50
        92.1%
        15SBCL1314STA_scaffold_closed
        2791.0Kbp
        2791.0Kbp
        0.0K
        1.0K
        2791.0Kbp
        2.8Mbp
        41.0
        36.74
        4.55
        2605
        42
        94.6%
        15SBCL1391STA_scaffold_closed
        2696.1Kbp
        2696.1Kbp
        0.0K
        1.0K
        2696.1Kbp
        2.7Mbp
        30.0
        47.14
        4.57
        2501
        31
        96.1%
        15SBCL1397STA_scaffold_closed
        2704.3Kbp
        2704.3Kbp
        0.0K
        1.0K
        2704.3Kbp
        2.7Mbp
        50.0
        737.95
        29.36
        2518
        48
        91.3%
        15SBCL1404STA_scaffold_closed
        2785.5Kbp
        2785.5Kbp
        0.0K
        1.0K
        2785.5Kbp
        2.8Mbp
        53.0
        675.37
        28.27
        2307
        45
        92.4%
        15SBCL1409STA_scaffold_closed
        2710.7Kbp
        2710.7Kbp
        0.0K
        1.0K
        2710.7Kbp
        2.8Mbp
        50.0
        741.60
        29.62
        2518
        47
        91.3%
        15SBCL1428STA_scaffold_closed
        1815.6Kbp
        892.1Kbp
        0.0K
        2.0K
        1815.6Kbp
        2.7Mbp
        46.0
        748.69
        29.96
        2511
        48
        91.3%
        15SBCL1430STA_scaffold_closed
        2312.8Kbp
        2312.8Kbp
        0.0K
        1.0K
        2312.8Kbp
        2.7Mbp
        41.0
        731.56
        28.25
        2520
        46
        91.2%
        15SBCL1434STA_scaffold_closed
        1612.8Kbp
        1288.1Kbp
        0.0K
        2.0K
        1612.8Kbp
        2.9Mbp
        46.0
        297.79
        13.01
        2409
        42
        93.0%
        15SBCL1438STA_scaffold_closed
        2753.4Kbp
        2753.4Kbp
        0.0K
        1.0K
        2753.4Kbp
        2.8Mbp
        25.0
        67.02
        7.50
        2600
        31
        98.2%
        15SBCL1506STA_scaffold_closed
        1821.8Kbp
        1026.5Kbp
        0.0K
        2.0K
        1821.8Kbp
        2.9Mbp
        43.0
        93.73
        6.67
        2704
        49
        96.7%
        15SBCL1507STA_scaffold_closed
        2729.9Kbp
        2729.9Kbp
        0.0K
        1.0K
        2729.9Kbp
        2.7Mbp
        40.0
        21.33
        2.72
        2514
        29
        95.2%
        15SBCL1509STA_scaffold_closed
        2230.5Kbp
        2230.5Kbp
        0.0K
        1.0K
        2230.5Kbp
        2.7Mbp
        69.0
        712.03
        28.82
        2575
        50
        93.7%
        15SBCL1517STA_scaffold_closed
        2779.7Kbp
        2779.7Kbp
        0.0K
        1.0K
        2779.7Kbp
        2.8Mbp
        26.0
        16.93
        3.53
        2585
        30
        95.9%
        15SBCL1520STA_scaffold_closed
        1835.1Kbp
        952.0Kbp
        0.0K
        2.0K
        1835.1Kbp
        2.8Mbp
        54.0
        700.28
        31.84
        2580
        52
        93.0%
        15SBCL1527STA_scaffold_closed
        1796.2Kbp
        913.6Kbp
        0.0K
        2.0K
        1796.2Kbp
        2.7Mbp
        67.0
        1408.90
        53.92
        2449
        49
        88.5%
        15SBCL1540STA_scaffold_closed
        2768.8Kbp
        2768.8Kbp
        0.0K
        1.0K
        2768.8Kbp
        2.8Mbp
        53.0
        692.35
        32.21
        2580
        50
        93.0%
        15SBCL1548STA_scaffold_closed
        1818.6Kbp
        948.7Kbp
        0.0K
        2.0K
        1818.6Kbp
        2.8Mbp
        48.0
        699.63
        32.24
        2578
        52
        93.0%
        15SBCL1550STA_scaffold_closed
        2707.7Kbp
        2707.7Kbp
        0.0K
        1.0K
        2707.7Kbp
        2.7Mbp
        31.0
        24.45
        3.47
        2517
        26
        95.3%
        15SBCL1560STA_scaffold_closed
        2720.2Kbp
        2720.2Kbp
        0.0K
        1.0K
        2720.2Kbp
        2.7Mbp
        47.0
        694.46
        31.66
        2541
        48
        91.9%
        15SBCL1565STA_scaffold_closed
        2721.6Kbp
        2721.6Kbp
        0.0K
        1.0K
        2721.6Kbp
        2.7Mbp
        44.0
        676.22
        31.50
        2523
        50
        91.6%
        15SBCL1570STA_scaffold_closed
        2719.8Kbp
        2719.8Kbp
        0.0K
        1.0K
        2719.8Kbp
        2.7Mbp
        46.0
        688.17
        32.37
        2536
        52
        91.9%
        15SBCL1571STA_scaffold_closed
        2721.5Kbp
        2721.5Kbp
        0.0K
        1.0K
        2721.5Kbp
        2.7Mbp
        53.0
        691.06
        31.24
        2534
        48
        91.9%
        15SBCL1576STA_scaffold_closed
        2724.2Kbp
        2724.2Kbp
        0.0K
        1.0K
        2724.2Kbp
        2.7Mbp
        48.0
        692.86
        31.11
        2541
        47
        91.9%
        16SBCL1007STA_scaffold_closed
        2857.8Kbp
        2857.8Kbp
        0.0K
        1.0K
        2857.8Kbp
        2.9Mbp
        36.0
        39.21
        5.16
        2671
        25
        96.2%
        16SBCL1028STA_scaffold_closed
        2753.8Kbp
        2753.8Kbp
        0.0K
        1.0K
        2753.8Kbp
        2.8Mbp
        70.0
        733.88
        30.10
        2573
        54
        93.7%
        16SBCL1033STA_scaffold_closed
        2752.5Kbp
        2752.5Kbp
        0.0K
        1.0K
        2752.5Kbp
        2.8Mbp
        71.0
        703.43
        29.66
        2572
        53
        93.6%
        16SBCL1038STA_scaffold_closed
        2753.4Kbp
        2753.4Kbp
        0.0K
        1.0K
        2753.4Kbp
        2.8Mbp
        68.0
        702.91
        28.34
        2574
        49
        93.6%
        16SBCL1043STA_scaffold_closed
        1871.9Kbp
        883.6Kbp
        0.0K
        2.0K
        1871.9Kbp
        2.8Mbp
        72.0
        728.18
        29.61
        2571
        54
        93.6%
        16SBCL1068STA_scaffold_closed
        1811.5Kbp
        976.9Kbp
        0.0K
        2.0K
        1811.5Kbp
        2.8Mbp
        35.0
        99.22
        8.51
        2688
        41
        96.2%
        16SBCL1169STA_scaffold_closed
        2124.2Kbp
        2124.2Kbp
        0.0K
        1.0K
        2124.2Kbp
        2.8Mbp
        28.0
        97.55
        8.22
        2685
        40
        96.2%
        16SBCL1181STA_scaffold_closed
        1738.2Kbp
        787.3Kbp
        0.0K
        2.0K
        1738.2Kbp
        2.8Mbp
        27.0
        64.85
        7.14
        2661
        29
        95.3%
        16SBCL1204STA_scaffold_closed
        1810.7Kbp
        548.5Kbp
        0.0K
        2.0K
        1810.7Kbp
        2.8Mbp
        50.0
        791.14
        36.65
        2286
        45
        91.9%
        16SBCL1221STA_scaffold_closed
        2747.3Kbp
        2747.3Kbp
        0.0K
        1.0K
        2747.3Kbp
        2.7Mbp
        25.0
        50.77
        5.86
        2646
        24
        94.9%
        16SBCL1248STA_scaffold_closed
        2166.3Kbp
        2166.3Kbp
        0.0K
        1.0K
        2166.3Kbp
        2.7Mbp
        42.0
        56.60
        6.31
        2471
        29
        90.6%
        16SBCL1251STA_scaffold_closed
        2335.4Kbp
        2335.4Kbp
        0.0K
        1.0K
        2335.4Kbp
        2.7Mbp
        27.0
        22.31
        3.35
        2519
        24
        95.4%
        16SBCL1284STA_scaffold_closed
        2865.9Kbp
        2865.9Kbp
        0.0K
        1.0K
        2865.9Kbp
        2.9Mbp
        48.0
        147.09
        7.96
        2566
        50
        94.0%
        16SBCL1289STA_scaffold_closed
        2794.6Kbp
        2794.6Kbp
        0.0K
        1.0K
        2794.6Kbp
        2.8Mbp
        47.0
        147.61
        7.68
        2593
        39
        94.2%
        16SBCL1291STA_scaffold_closed
        2789.0Kbp
        2789.0Kbp
        0.0K
        1.0K
        2789.0Kbp
        2.8Mbp
        45.0
        794.64
        36.76
        2287
        44
        92.0%
        16SBCL1299STA_scaffold_closed
        2781.1Kbp
        2781.1Kbp
        0.0K
        1.0K
        2781.1Kbp
        2.8Mbp
        67.0
        763.36
        32.96
        2507
        52
        90.1%
        16SBCL1533STA_scaffold_closed
        1572.8Kbp
        949.5Kbp
        0.0K
        2.0K
        1572.8Kbp
        2.8Mbp
        76.0
        711.81
        28.84
        2566
        57
        93.6%
        16SBCL1572STA_scaffold_closed
        2769.1Kbp
        2769.1Kbp
        0.0K
        1.0K
        2769.1Kbp
        2.8Mbp
        33.0
        51.29
        5.13
        2505
        27
        96.2%
        16SBCL1577STA_scaffold_closed
        2774.7Kbp
        2774.7Kbp
        0.0K
        1.0K
        2774.7Kbp
        2.8Mbp
        64.0
        704.18
        33.76
        2559
        56
        92.8%
        16SBCL1645STA_scaffold_closed
        2730.5Kbp
        2730.5Kbp
        0.0K
        1.0K
        2730.5Kbp
        2.7Mbp
        26.0
        44.75
        4.90
        2494
        29
        95.0%
        16SBCL1648STA_scaffold_closed
        2810.2Kbp
        2810.2Kbp
        0.0K
        1.0K
        2810.2Kbp
        2.8Mbp
        46.0
        36.84
        4.16
        2455
        29
        93.8%
        16SBCL1650STA_scaffold_closed
        2743.5Kbp
        2743.5Kbp
        0.0K
        1.0K
        2743.5Kbp
        2.7Mbp
        77.0
        721.07
        30.28
        2559
        64
        93.5%
        16SBCL233STA_scaffold_closed
        2783.0Kbp
        2783.0Kbp
        0.0K
        1.0K
        2783.0Kbp
        2.8Mbp
        48.0
        131.17
        8.07
        2525
        35
        92.2%
        16SBCL234STA_scaffold_closed
        2783.6Kbp
        2783.6Kbp
        0.0K
        1.0K
        2783.6Kbp
        2.8Mbp
        54.0
        134.78
        8.26
        2520
        38
        92.2%
        16SBCL246STA_scaffold_closed
        2683.7Kbp
        2683.7Kbp
        0.0K
        1.0K
        2683.7Kbp
        2.7Mbp
        140.0
        704.54
        44.26
        2467
        123
        92.4%
        16SBCL247STA_scaffold_closed
        2275.2Kbp
        2275.2Kbp
        0.0K
        1.0K
        2275.2Kbp
        2.8Mbp
        32.0
        31.05
        4.63
        2608
        26
        94.4%
        16SBCL259STA_scaffold_closed
        2386.8Kbp
        2386.8Kbp
        0.0K
        1.0K
        2386.8Kbp
        2.8Mbp
        55.0
        767.69
        32.81
        2376
        45
        92.1%
        16SBCL260STA_scaffold_closed
        2737.2Kbp
        2737.2Kbp
        0.0K
        1.0K
        2737.2Kbp
        2.8Mbp
        54.0
        765.26
        32.25
        2381
        44
        92.2%
        16SBCL266STA_scaffold_closed
        2340.3Kbp
        2340.3Kbp
        0.0K
        1.0K
        2340.3Kbp
        2.8Mbp
        56.0
        768.43
        32.59
        2380
        42
        92.1%
        16SBCL276STA_scaffold_closed
        2796.6Kbp
        2796.6Kbp
        0.0K
        1.0K
        2796.6Kbp
        2.8Mbp
        35.0
        37.47
        3.48
        2452
        27
        93.9%
        16SBCL279STA_scaffold_closed
        1875.5Kbp
        755.7Kbp
        0.0K
        2.0K
        1875.5Kbp
        2.8Mbp
        117.0
        24.75
        4.29
        2434
        110
        95.3%
        16SBCL285STA_scaffold_closed
        2730.8Kbp
        2730.8Kbp
        0.0K
        1.0K
        2730.8Kbp
        2.7Mbp
        50.0
        696.42
        32.50
        2538
        48
        92.1%
        16SBCL291STA_scaffold_closed
        2784.2Kbp
        2784.2Kbp
        0.0K
        1.0K
        2784.2Kbp
        2.8Mbp
        52.0
        132.75
        9.42
        2516
        44
        92.2%
        16SBCL38STA_scaffold_closed
        2754.0Kbp
        2754.0Kbp
        0.0K
        1.0K
        2754.0Kbp
        2.8Mbp
        73.0
        731.45
        30.14
        2559
        57
        93.6%
        16SBCL443STA_scaffold_closed
        2783.9Kbp
        2783.9Kbp
        0.0K
        1.0K
        2783.9Kbp
        2.8Mbp
        52.0
        704.28
        30.95
        2588
        52
        93.2%
        16SBCL448STA_scaffold_closed
        2764.9Kbp
        2764.9Kbp
        0.0K
        1.0K
        2764.9Kbp
        2.8Mbp
        47.0
        702.84
        32.57
        2586
        49
        93.3%
        16SBCL677STA_scaffold_closed
        2759.7Kbp
        2759.7Kbp
        0.0K
        1.0K
        2759.7Kbp
        2.8Mbp
        0.0
        3185.03
        134.44
        115
        10
        2.9%
        16SBCL81STA_scaffold_closed
        2238.5Kbp
        2238.5Kbp
        0.0K
        1.0K
        2238.5Kbp
        2.7Mbp
        45.0
        734.26
        28.65
        2412
        39
        91.9%
        16SBCL840STA_scaffold_closed
        2705.2Kbp
        2705.2Kbp
        0.0K
        1.0K
        2705.2Kbp
        2.7Mbp
        49.0
        718.24
        32.09
        2529
        52
        92.0%
        16SBCL841STA_scaffold_closed
        2399.3Kbp
        2399.3Kbp
        0.0K
        1.0K
        2399.3Kbp
        2.8Mbp
        42.0
        55.59
        6.08
        2507
        25
        96.0%
        16SBCL899STA_scaffold_closed
        2996.9Kbp
        2996.9Kbp
        0.0K
        1.0K
        2996.9Kbp
        3.0Mbp
        39.0
        43.56
        6.22
        2576
        26
        94.2%
        16SBCL901STA_scaffold_closed
        2755.4Kbp
        2755.4Kbp
        0.0K
        1.0K
        2755.4Kbp
        2.8Mbp
        66.0
        723.13
        27.73
        2409
        54
        91.3%
        17-09KF_scaffold
        3107.1Kbp
        3107.1Kbp
        0.0K
        1.0K
        3107.1Kbp
        3.5Mbp
        424.0
        147.41
        17.68
        1991
        496
        93.4%
        17SBCL03STA_scaffold_closed
        2768.1Kbp
        2768.1Kbp
        0.0K
        1.0K
        2768.1Kbp
        2.8Mbp
        38.0
        45.88
        5.00
        2561
        31
        97.2%
        17SBCL07STA_scaffold_closed
        2019.7Kbp
        706.4Kbp
        0.0K
        2.0K
        2019.7Kbp
        2.8Mbp
        36.0
        46.07
        5.41
        2560
        30
        97.2%
        17SBCL08STA_scaffold_closed
        2779.4Kbp
        2779.4Kbp
        0.0K
        1.0K
        2779.4Kbp
        2.8Mbp
        36.0
        39.89
        3.94
        2454
        32
        93.9%
        17SBCL09STA_scaffold_closed
        2794.1Kbp
        2794.1Kbp
        0.0K
        1.0K
        2794.1Kbp
        2.8Mbp
        41.0
        38.17
        4.39
        2456
        28
        93.8%
        17SBCL13STA_scaffold_closed
        1013.8Kbp
        1013.8Kbp
        0.0K
        2.0K
        1519.7Kbp
        3.3Mbp
        222.0
        372.06
        25.21
        2264
        252
        94.3%
        17SBCL18STA_scaffold_closed
        2704.1Kbp
        2704.1Kbp
        0.0K
        1.0K
        2704.1Kbp
        2.7Mbp
        33.0
        44.27
        9.99
        2491
        45
        95.1%
        17SBCL202STA_scaffold_closed
        2690.5Kbp
        2690.5Kbp
        0.0K
        1.0K
        2690.5Kbp
        2.7Mbp
        58.0
        661.28
        25.01
        2489
        52
        91.8%
        17SBCL208STA_scaffold_closed
        1701.7Kbp
        948.9Kbp
        0.0K
        2.0K
        1701.7Kbp
        2.7Mbp
        63.0
        684.89
        25.50
        2453
        53
        90.6%
        17SBCL214STA_scaffold_closed
        1945.4Kbp
        589.0Kbp
        0.0K
        2.0K
        1945.4Kbp
        2.7Mbp
        58.0
        660.19
        24.14
        2498
        52
        92.0%
        17SBCL220STA_scaffold_closed
        1679.0Kbp
        791.3Kbp
        0.0K
        2.0K
        1679.0Kbp
        2.7Mbp
        60.0
        676.12
        24.75
        2486
        50
        91.9%
        17SBCL223STA_scaffold_closed
        2325.5Kbp
        2325.5Kbp
        0.0K
        1.0K
        2325.5Kbp
        2.7Mbp
        28.0
        49.54
        4.69
        2500
        31
        96.1%
        17SBCL225STA_scaffold_closed
        2124.8Kbp
        2124.8Kbp
        0.0K
        1.0K
        2124.8Kbp
        2.7Mbp
        50.0
        662.68
        24.99
        2495
        50
        91.9%
        17SBCL25STA_scaffold_closed
        2162.2Kbp
        2162.2Kbp
        0.0K
        1.0K
        2162.2Kbp
        2.7Mbp
        0.0
        3111.64
        128.72
        149
        18
        4.1%
        17SBCL532STA_scaffold_closed
        2768.8Kbp
        2768.8Kbp
        0.0K
        1.0K
        2768.8Kbp
        2.8Mbp
        54.0
        718.64
        31.78
        2567
        53
        93.1%
        17SBCL533STA_scaffold_closed
        2770.8Kbp
        2770.8Kbp
        0.0K
        1.0K
        2770.8Kbp
        2.8Mbp
        52.0
        720.10
        32.53
        2574
        52
        93.3%
        17SBCL580STA_scaffold_closed
        1915.5Kbp
        865.1Kbp
        0.0K
        2.0K
        1915.5Kbp
        2.8Mbp
        28.0
        65.53
        4.42
        2601
        32
        96.3%
        17SBCL585STA_scaffold_closed
        2782.6Kbp
        2782.6Kbp
        0.0K
        1.0K
        2782.6Kbp
        2.8Mbp
        28.0
        67.04
        4.63
        2603
        31
        96.4%
        17SBCL586STA_scaffold_closed
        2781.1Kbp
        2781.1Kbp
        0.0K
        1.0K
        2781.1Kbp
        2.8Mbp
        28.0
        65.20
        5.48
        2605
        32
        96.3%
        17SBCL718STA_scaffold_closed
        2004.7Kbp
        749.9Kbp
        0.0K
        2.0K
        2004.7Kbp
        2.8Mbp
        41.0
        24.53
        3.20
        2512
        36
        95.4%
        17SBCL778STA_scaffold_closed
        2696.6Kbp
        2696.6Kbp
        0.0K
        1.0K
        2696.6Kbp
        2.7Mbp
        31.0
        49.19
        5.85
        2500
        32
        96.1%
        18SBCL287STA_scaffold_closed
        2770.4Kbp
        2770.4Kbp
        0.0K
        1.0K
        2770.4Kbp
        2.8Mbp
        55.0
        693.49
        30.39
        2534
        53
        92.2%
        18SBCL369STA_scaffold_closed
        2092.1Kbp
        2092.1Kbp
        0.0K
        1.0K
        2092.1Kbp
        2.7Mbp
        71.0
        1026.83
        41.56
        2361
        57
        89.0%
        18SBCL52STA_scaffold_closed
        2107.2Kbp
        712.0Kbp
        0.0K
        2.0K
        2107.2Kbp
        2.8Mbp
        57.0
        823.91
        34.49
        2302
        45
        92.4%
        18SBCL58STA_scaffold_closed
        2645.6Kbp
        2645.6Kbp
        0.0K
        1.0K
        2645.6Kbp
        2.7Mbp
        53.0
        720.69
        26.60
        2359
        42
        91.4%
        18SBCL598STA_scaffold_closed
        2756.8Kbp
        2756.8Kbp
        0.0K
        1.0K
        2756.8Kbp
        2.8Mbp
        29.0
        46.96
        6.74
        2655
        31
        95.2%
        18SBCL59STA_scaffold_closed
        2761.9Kbp
        2761.9Kbp
        0.0K
        1.0K
        2761.9Kbp
        2.8Mbp
        48.0
        704.11
        33.43
        2556
        43
        92.5%
        18SBCL601STA_scaffold_closed
        2718.4Kbp
        2718.4Kbp
        0.0K
        1.0K
        2718.4Kbp
        2.7Mbp
        49.0
        710.78
        32.95
        2484
        45
        91.9%
        18SBCL64STA_scaffold_closed
        2208.6Kbp
        2208.6Kbp
        0.0K
        1.0K
        2208.6Kbp
        2.7Mbp
        50.0
        723.84
        26.76
        2359
        42
        91.4%
        18SBCL65STA_scaffold_closed
        2781.5Kbp
        2781.5Kbp
        0.0K
        1.0K
        2781.5Kbp
        2.8Mbp
        51.0
        688.98
        30.50
        2539
        45
        91.9%
        18SBCL667STA_scaffold_closed
        2696.9Kbp
        2696.9Kbp
        0.0K
        1.0K
        2696.9Kbp
        2.7Mbp
        60.0
        664.28
        25.01
        2487
        46
        92.0%
        18SBCL668STA_scaffold_closed
        2698.1Kbp
        2698.1Kbp
        0.0K
        1.0K
        2698.1Kbp
        2.7Mbp
        22.0
        68.72
        6.67
        2594
        19
        97.8%
        18SBCL669STA_scaffold_closed
        2739.6Kbp
        2739.6Kbp
        0.0K
        1.0K
        2739.6Kbp
        2.8Mbp
        54.0
        861.12
        38.80
        2263
        44
        91.0%
        18SBCL670STA_scaffold_closed
        2741.5Kbp
        2741.5Kbp
        0.0K
        1.0K
        2741.5Kbp
        2.8Mbp
        34.0
        58.73
        7.73
        2590
        26
        98.2%
        18SBCL671STA_scaffold_closed
        2805.8Kbp
        2805.8Kbp
        0.0K
        1.0K
        2805.8Kbp
        2.9Mbp
        35.0
        73.81
        5.50
        2617
        32
        95.2%
        18SBCL672STA_scaffold_closed
        2737.2Kbp
        2737.2Kbp
        0.0K
        1.0K
        2737.2Kbp
        2.8Mbp
        57.0
        690.23
        32.93
        2395
        51
        92.0%
        18SBCL673STA_scaffold_closed
        2751.1Kbp
        2751.1Kbp
        0.0K
        1.0K
        2751.1Kbp
        2.8Mbp
        71.0
        1769.47
        55.83
        2281
        54
        84.8%
        18SBCL674STA_scaffold_closed
        2748.7Kbp
        2748.7Kbp
        0.0K
        1.0K
        2748.7Kbp
        2.8Mbp
        69.0
        1796.64
        57.73
        2293
        52
        85.2%
        18SBCL675STA_scaffold_closed
        2829.7Kbp
        2829.7Kbp
        0.0K
        1.0K
        2829.7Kbp
        2.9Mbp
        49.0
        60.44
        6.29
        2582
        31
        94.3%
        18SBCL676STA_scaffold_closed
        2720.0Kbp
        2720.0Kbp
        0.0K
        1.0K
        2720.0Kbp
        2.8Mbp
        69.0
        1759.79
        55.74
        2298
        55
        85.0%
        18SBCL677STA_scaffold_closed
        2723.1Kbp
        2723.1Kbp
        0.0K
        1.0K
        2723.1Kbp
        2.8Mbp
        70.0
        1763.45
        55.94
        2298
        55
        85.0%
        18SBCL678STA_scaffold_closed
        2912.5Kbp
        2912.5Kbp
        0.0K
        1.0K
        2912.5Kbp
        3.0Mbp
        62.0
        131.02
        9.17
        2527
        38
        92.4%
        18SBCL679STA_scaffold_closed
        2719.6Kbp
        2719.6Kbp
        0.0K
        1.0K
        2719.6Kbp
        2.8Mbp
        52.0
        691.82
        29.78
        2376
        40
        92.0%
        18SBCL680STA_scaffold_closed
        2691.6Kbp
        2691.6Kbp
        0.0K
        1.0K
        2691.6Kbp
        2.7Mbp
        58.0
        680.34
        24.51
        2488
        45
        91.8%
        18SBCL850STA_scaffold_closed
        2757.3Kbp
        2757.3Kbp
        0.0K
        1.0K
        2757.3Kbp
        2.8Mbp
        45.0
        720.52
        28.69
        2408
        42
        91.2%
        18SBCL855STA_scaffold_closed
        2389.8Kbp
        2389.8Kbp
        0.0K
        1.0K
        2389.8Kbp
        2.8Mbp
        31.0
        26.84
        2.68
        2519
        27
        95.4%
        18SBCL858STA_scaffold_closed
        2391.5Kbp
        2391.5Kbp
        0.0K
        1.0K
        2391.5Kbp
        2.8Mbp
        32.0
        25.35
        2.61
        2519
        27
        95.5%
        18SBCL882STA_scaffold_closed
        2750.9Kbp
        2750.9Kbp
        0.0K
        1.0K
        2750.9Kbp
        2.8Mbp
        53.0
        698.14
        32.23
        2540
        47
        91.7%
        18SBCL887STA_scaffold_closed
        2715.6Kbp
        2715.6Kbp
        0.0K
        1.0K
        2715.6Kbp
        2.7Mbp
        46.0
        696.47
        31.97
        2534
        51
        91.7%
        18SBCL888STA_scaffold_closed
        1898.4Kbp
        818.0Kbp
        0.0K
        2.0K
        1898.4Kbp
        2.7Mbp
        51.0
        689.07
        31.92
        2539
        47
        91.7%
        18SBCL893STA_scaffold_closed
        2716.9Kbp
        2716.9Kbp
        0.0K
        1.0K
        2716.9Kbp
        2.7Mbp
        54.0
        677.86
        31.48
        2529
        48
        91.6%
        18SBCL903STA_scaffold_closed
        2714.2Kbp
        2714.2Kbp
        0.0K
        1.0K
        2714.2Kbp
        2.7Mbp
        50.0
        688.80
        31.62
        2540
        48
        91.7%
        18SBCL908STA_scaffold_closed
        2760.0Kbp
        2760.0Kbp
        0.0K
        1.0K
        2760.0Kbp
        2.8Mbp
        55.0
        690.61
        31.75
        2529
        48
        91.6%
        18SBCL913STA_scaffold_closed
        2715.3Kbp
        2715.3Kbp
        0.0K
        1.0K
        2715.3Kbp
        2.7Mbp
        52.0
        690.97
        30.55
        2528
        50
        91.4%
        18SBCL914STA_scaffold_closed
        2715.5Kbp
        2715.5Kbp
        0.0K
        1.0K
        2715.5Kbp
        2.7Mbp
        47.0
        685.60
        31.70
        2537
        48
        91.7%
        18SBCL919STA_scaffold_closed
        1898.9Kbp
        817.8Kbp
        0.0K
        2.0K
        1898.9Kbp
        2.7Mbp
        46.0
        691.42
        33.00
        2537
        48
        91.7%
        18SBCL920STA_scaffold_closed
        2717.3Kbp
        2717.3Kbp
        0.0K
        1.0K
        2717.3Kbp
        2.7Mbp
        55.0
        698.16
        31.82
        2536
        49
        91.7%
        18SBCL921STA_scaffold_closed
        2718.2Kbp
        2718.2Kbp
        0.0K
        1.0K
        2718.2Kbp
        2.7Mbp
        53.0
        694.16
        31.59
        2535
        52
        91.7%
        18SBCL922STA_scaffold_closed
        1385.9Kbp
        939.5Kbp
        0.0K
        2.0K
        1385.9Kbp
        2.7Mbp
        53.0
        691.18
        31.78
        2527
        60
        91.7%
        18SBCL923STA_scaffold_closed
        2676.8Kbp
        2676.8Kbp
        0.0K
        1.0K
        2676.8Kbp
        2.7Mbp
        54.0
        692.40
        31.59
        2503
        46
        90.4%
        18SBCL924STA_scaffold_closed
        2714.8Kbp
        2714.8Kbp
        0.0K
        1.0K
        2714.8Kbp
        2.7Mbp
        50.0
        686.58
        31.82
        2536
        49
        91.7%
        18SBCL925STA_scaffold_closed
        2717.9Kbp
        2717.9Kbp
        0.0K
        1.0K
        2717.9Kbp
        2.7Mbp
        50.0
        686.99
        30.82
        2538
        48
        91.7%
        1A_scaffold_closed
        2688.2Kbp
        2688.2Kbp
        0.0K
        1.0K
        2688.2Kbp
        2.7Mbp
        27.0
        16.51
        2.16
        2518
        24
        95.3%
        28306_S10_scaffold_closed
        2720.6Kbp
        2720.6Kbp
        0.0K
        1.0K
        2720.6Kbp
        2.7Mbp
        33.0
        47.99
        4.76
        2606
        25
        94.9%
        294E_scaffold_closed
        2123.5Kbp
        2123.5Kbp
        0.0K
        1.0K
        2123.5Kbp
        2.8Mbp
        36.0
        77.36
        5.62
        2698
        40
        96.5%
        333E_scaffold_closed
        2781.2Kbp
        2781.2Kbp
        0.0K
        1.0K
        2781.2Kbp
        2.8Mbp
        39.0
        39.84
        4.46
        2491
        36
        96.1%
        367F_scaffold_closed
        2687.0Kbp
        2687.0Kbp
        0.0K
        1.0K
        2687.0Kbp
        2.7Mbp
        29.0
        19.03
        2.84
        2515
        27
        95.2%
        36A_scaffold_closed
        2078.0Kbp
        2078.0Kbp
        0.0K
        1.0K
        2078.0Kbp
        2.7Mbp
        41.0
        671.54
        31.23
        2565
        45
        92.7%
        388F_scaffold_closed
        2700.9Kbp
        2700.9Kbp
        0.0K
        1.0K
        2700.9Kbp
        2.7Mbp
        37.0
        64.89
        6.80
        2648
        38
        94.3%
        42719_1_S7_scaffold_closed
        2790.5Kbp
        2790.5Kbp
        0.0K
        1.0K
        2790.5Kbp
        2.8Mbp
        50.0
        705.99
        31.35
        2340
        52
        93.7%
        42719_2_S8_scaffold_closed
        2796.8Kbp
        2796.8Kbp
        0.0K
        1.0K
        2796.8Kbp
        2.8Mbp
        49.0
        711.90
        31.99
        2341
        51
        93.7%
        42719_3_S9_scaffold_closed
        2788.1Kbp
        2788.1Kbp
        0.0K
        1.0K
        2788.1Kbp
        2.8Mbp
        46.0
        712.66
        32.62
        2343
        49
        93.7%
        42719_4_S10_scaffold_closed
        2790.5Kbp
        2790.5Kbp
        0.0K
        1.0K
        2790.5Kbp
        2.8Mbp
        46.0
        709.84
        31.93
        2340
        53
        93.7%
        42719_5_S11_scaffold_closed
        2812.1Kbp
        2812.1Kbp
        0.0K
        1.0K
        2812.1Kbp
        2.8Mbp
        48.0
        706.95
        32.03
        2332
        49
        93.5%
        42A_scaffold_closed
        2338.3Kbp
        2338.3Kbp
        0.0K
        1.0K
        2338.3Kbp
        2.7Mbp
        41.0
        40.80
        6.65
        2643
        34
        94.9%
        43113_S11_scaffold_closed
        2752.2Kbp
        2752.2Kbp
        0.0K
        1.0K
        2752.2Kbp
        2.8Mbp
        35.0
        42.09
        3.59
        2508
        25
        95.0%
        43A_scaffold_closed
        2216.6Kbp
        2216.6Kbp
        0.0K
        1.0K
        2216.6Kbp
        2.8Mbp
        79.0
        1841.56
        63.23
        2399
        67
        86.4%
        44A_scaffold_closed
        2712.8Kbp
        2712.8Kbp
        0.0K
        1.0K
        2712.8Kbp
        2.7Mbp
        52.0
        657.67
        29.46
        2562
        48
        93.0%
        45A_scaffold_closed
        2320.9Kbp
        2320.9Kbp
        0.0K
        1.0K
        2320.9Kbp
        2.7Mbp
        37.0
        55.08
        5.32
        2598
        34
        95.0%
        46AKF_scaffold_closed
        2688.6Kbp
        2688.6Kbp
        0.0K
        1.0K
        2688.6Kbp
        2.7Mbp
        73.0
        1807.86
        61.34
        2263
        55
        84.8%
        46A_scaffold_closed
        2704.3Kbp
        2704.3Kbp
        0.0K
        1.0K
        2704.3Kbp
        2.7Mbp
        63.0
        2026.65
        66.68
        2287
        69
        82.1%
        47A_scaffold_closed
        2746.6Kbp
        2746.6Kbp
        0.0K
        1.0K
        2746.6Kbp
        2.8Mbp
        25.0
        51.57
        5.54
        2619
        30
        95.7%
        82862_S4_scaffold_closed
        2784.8Kbp
        2784.8Kbp
        0.0K
        1.0K
        2784.8Kbp
        2.8Mbp
        40.0
        45.67
        5.48
        2614
        28
        95.4%

        Number of Contigs

        This plot shows the number of contigs found for each assembly, broken down by length.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Bowtie 2

        Bowtie 2 is an ultrafast and memory-efficient tool for aligning sequencing reads to long reference sequences.

        This plot shows the number of reads aligning to the reference in different ways.

        There are 3 possible types of alignment: SE Mapped uniquely: Read has only one occurence in the reference genome. SE Multimapped: Read has multiple occurence. * SE No aligned: Read has no occurence.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Trimmomatic

        Trimmomatic is a flexible read trimming tool for Illumina NGS data.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        FastQC

        FastQC is a quality control tool for high throughput sequence data, written by Simon Andrews at the Babraham Institute in Cambridge.

        Sequence Quality Histograms

        The mean quality value across each base position in the read. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Sequence Quality Scores

        The number of reads with average quality scores. Shows if a subset of reads has poor quality. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Base Sequence Content

        The proportion of each base position for which each of the four normal DNA bases has been called. See the FastQC help.

        Click a sample row to see a line plot for that dataset.
        Rollover for sample name
        Position: -
        %T: -
        %C: -
        %A: -
        %G: -

        Per Sequence GC Content

        The average GC content of reads. Normal random library typically have a roughly normal distribution of GC content. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Per Base N Content

        The percentage of base calls at each position for which an N was called. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Sequence Length Distribution

        The distribution of fragment sizes (read lengths) found. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Sequence Duplication Levels

        The relative level of duplication found for every sequence. See the FastQC help.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).


        Overrepresented sequences

        The total amount of overrepresented sequences found in each library. See the FastQC help for further information.

        622 samples had less than 1% of reads made up of overrepresented sequences

        Adapter Content

        The cumulative percentage count of the proportion of your library which has seen each of the adapter sequences at each position. See the FastQC help. Only samples with ≥ 0.1% adapter contamination are shown.

        Flat image plot. Toolbox functions such as highlighting / hiding samples will not work (see the docs).